2N9R | pdb_00002n9r

Novel antimicrobial peptide PaDBS1R1 designed from the ribosomal protein L39E from Pyrobaculum aerophilum using bioinformatics

PDB DOI: https://doi.org/10.2210/pdb2N9R/pdb
BMRB: 25916

Classification: ANTIMICROBIAL PROTEIN
Organism(s): synthetic construct
Mutation(s): No

Deposited: 2015-12-03 Released: 2016-12-07
Deposition Author(s): Irazazabal, L.S.F., Porto, W.F., Alves, E.S.F., Matos, C.O., Hancock, R.E.W., Haney, E., Ribeiro, S.M., Liao, L.M., Ladram, A.S.F., Franco, O.L.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2N9R

This is version 1.1 of the entry. See complete history.

Literature

Novel antimicrobial peptide PaDBS1R1 designed from the ribosomal protein L39E from Pyrobaculum aerophilum using bioinformatics

Alves, E.S.F., Matos, C.O., Liao, L.M.

To be published.

Macromolecule Content

Total Structure Weight: 2.11 kDa
Atom Count: 149
Modeled Residue Count: 20
Deposited Residue Count: 20
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Antimicrobial peptide PaDBS1R1	A	20	synthetic construct	Mutation(s): 0
UniProt
Find proteins for Q8ZTX6 (Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)) Explore Q8ZTX6 Go to UniProtKB: Q8ZTX6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8ZTX6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2016-12-07

Deposition Author(s):

Irazazabal, L.S.F.

Hancock, R.E.W.

Revision History (Full details and data files)

Version 1.0: 2016-12-07
Type: Initial release
Version 1.1: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.