2N0S | pdb_00002n0s

HADDOCK model of ferredoxin and [FeFe] hydrogenase complex

• PDB DOI: https://doi.org/10.2210/pdb2N0S/pdb
• BMRB: 19622

• Classification: OXIDOREDUCTASE
• Organism(s): Chlamydomonas reinhardtii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-03-13 Released: 2015-06-24 
• Deposition Author(s): Rumpel, S., Siebel, J., Fares, C., Reijerse, E., Lubitz, W.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 4 
• Selection Criteria: target function 

Literature

Structural Insight into the Complex of Ferredoxin and [FeFe] Hydrogenase from Chlamydomonas reinhardtii.

Rumpel, S., Siebel, J.F., Diallo, M., Fares, C., Reijerse, E.J., Lubitz, W.

(2015) Chembiochem 16: 1663-1669

• PubMed: 26010059 
• DOI: https://doi.org/10.1002/cbic.201500130
• Primary Citation Related Structures: 
  2N0S


• PubMed Abstract: 
  

  The transfer of photosynthetic electrons by the ferredoxin PetF to the [FeFe] hydrogenase HydA1 in the microalga Chlamydomonas reinhardtii is a key step in hydrogen production. Electron delivery requires a specific interaction between PetF and HydA1. However, because of the transient nature of the electron-transfer complex, a crystal structure remains elusive. Therefore, we performed protein-protein docking based on new experimental data from a solution NMR spectroscopy investigation of native and gallium-substituted PetF. This provides valuable information about residues crucial for complex formation and electron transfer. The derived complex model might help to pinpoint residue substitution targets for improved hydrogen production.

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Organizational Affiliation: 
• Department for Biophysical Chemistry, Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr (Germany). [e-mail].
Department for Biophysical Chemistry, Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr (Germany).
NMR Department, Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr (Germany).
Department for Biophysical Chemistry, Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr (Germany). [e-mail].

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 58.04 kDa 
• Atom Count: 3,783 
• Modeled Residue Count: 501 
• Deposited Residue Count: 536 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fe-hydrogenase	A	442	Chlamydomonas reinhardtii	Mutation(s): 0  Gene Names: hyd1, HYD1, hydA, hydA1, CHLREDRAFT_183963 EC: 1.18.99.1
UniProt
Find proteins for Q9FYU1 (Chlamydomonas reinhardtii) Explore Q9FYU1  Go to UniProtKB:  Q9FYU1

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferredoxin, chloroplastic	B	94	Chlamydomonas reinhardtii	Mutation(s): 0  Gene Names: PETF
UniProt
Find proteins for P07839 (Chlamydomonas reinhardtii) Explore P07839  Go to UniProtKB:  P07839

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SF4	C [auth A]	IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N
FES	D [auth B]	FE2/S2 (INORGANIC) CLUSTER Fe2 S2 NIXDOXVAJZFRNF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 4 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-06-24 
Deposition Author(s): Rumpel, S., Siebel, J., Fares, C., Reijerse, E., Lubitz, W.

Revision History  

• Version 1.0: 2015-06-24
  Type: Initial release
  
• Version 1.1: 2015-08-05
  Changes: Database references
• Version 1.2: 2023-06-14
  Changes: Data collection, Database references, Derived calculations, Other
• Version 1.3: 2024-05-15
  Changes: Data collection, Database references