2MXQ

The solution structure of DEFA1, a highly potent antimicrobial peptide from the horse


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Solution structure and functional studies of the highly potent equine antimicrobial peptide DEFA1.

Michalek, M.Jung, S.Shomali, M.R.Cauchard, S.Sonnichsen, F.D.Grotzinger, J.

(2015) Biochem Biophys Res Commun 459: 668-672

  • DOI: https://doi.org/10.1016/j.bbrc.2015.02.168
  • Primary Citation of Related Structures:  
    2MXQ

  • PubMed Abstract: 

    Defensins are small effector molecules of the innate immune system that are present in almost all organisms including plants and animals. These peptides possess antimicrobial activity against a broad range of microbes including bacteria, fungi and viruses and act as endogenous antibiotics. α-Defensins are a subfamily of the defensin family and their expression is limited to specific tissues. Equine DEFA1 is an enteric α-defensin exclusively secreted by Paneth cells and shows an activity against a broad spectrum of microbes, including typical pathogens of the horse such as Rhodococcus equi, various streptococci strains, Salmonella choleraesuis, and Pasteurella multocida. Here, we report the three-dimensional structure of DEFA1 solved by NMR-spectroscopy and demonstrate its specific function of aggregating various phospholipids.


  • Organizational Affiliation

    Institute of Biochemistry, Christian-Albrechts-Universität zu Kiel, Olshausenstr. 40, 24098 Kiel, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Paneth cell-specific alpha-defensin 134Equus caballusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A6YB85 (Equus caballus)
Explore A6YB85 
Go to UniProtKB:  A6YB85
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA6YB85
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-04-22
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references, Other
  • Version 1.2: 2024-11-20
    Changes: Data collection, Database references, Structure summary