2MVI | pdb_00002mvi

Structure of the S-glycosylated bacteriocin ASM1

PDB DOI: https://doi.org/10.2210/pdb2MVI/pdb
BMRB: 25269

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Lactiplantibacillus plantarum
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2014-10-06 Released: 2014-12-10
Deposition Author(s): Goroncy, A.K., Loo, T.S., Koolard, A., Patchett, M.L., Norris, G.E.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2MVI

This is version 1.3 of the entry. See complete history.

Literature

Structural characterization of the S-glycosylated bacteriocin ASM1 from Lactobacillus plantarum

Goroncy, A.K., Loo, T.S., Koolard, A., Patchett, M.L., Norris, G.E.

To be published.

Macromolecule Content

Total Structure Weight: 5.09 kDa
Atom Count: 350
Modeled Residue Count: 43
Deposited Residue Count: 43
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacteriocin plantarican ASM1	A	43	Lactiplantibacillus plantarum	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for C7G1H4 (Lactiplantibacillus plantarum) Explore C7G1H4 Go to UniProtKB: C7G1H4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C7G1H4
Glycosylation
Glycosylation Sites: 2	Glycosylation Focus chain A
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-12-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-12-10
Type: Initial release
Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary
Version 1.2: 2023-06-14
Changes: Database references, Other, Structure summary
Version 1.3: 2024-11-06
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.