2MUM

Solution structure of the PHD domain of Yeast YNG2

• PDB DOI: https://doi.org/10.2210/pdb2MUM/pdb
• BMRB: 25221

• Classification: Transcription Regulator
• Organism(s): Saccharomyces cerevisiae S288C
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-09-12 Released: 2014-12-24 
• Deposition Author(s): Taeb, S., Kaustov, L., Lemak, A., Farhadi, S., Sheng, Y.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Solution structure of the PHD domain of Yeast YNG2

Taeb, S., Kaustov, L., Lemak, A., Farhadi, S., Sheng, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 6.07 kDa 
• Atom Count: 415 
• Modelled Residue Count: 50 
• Deposited Residue Count: 50 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chromatin modification-related protein YNG2	A	50	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: YNG2, EAF4, NBN1, YHR090C
UniProt
Find proteins for P38806 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38806  Go to UniProtKB:  P38806

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-12-24 
Deposition Author(s): Taeb, S., Kaustov, L., Lemak, A., Farhadi, S., Sheng, Y.

Revision History  

• Version 1.0: 2014-12-24
  Type: Initial release
  
• Version 1.1: 2023-06-14
  Changes: Data collection, Database references, Derived calculations, Other
• Version 1.2: 2024-05-15
  Changes: Data collection, Database references