Download MendeleyStructure and sequence elements of the CR4/5 domain of medaka telomerase RNA important for telomerase function.
Kim, N.K., Zhang, Q., Feigon, J.(2014) Nucleic Acids Res 42: 3395-3408
- PubMed: 24335084 Search on PubMedSearch on PubMed Central
- DOI: https://doi.org/10.1093/nar/gkt1276
- Primary Citation Related Structures:
2MHI - PubMed Abstract:
Telomerase is a unique reverse transcriptase that maintains the 3' ends of eukaryotic chromosomes by adding tandem telomeric repeats. The RNA subunit (TR) of vertebrate telomerase provides a template for reverse transcription, contained within the conserved template/pseudoknot domain, and a conserved regions 4 and 5 (CR4/5) domain, all essential for catalytic activity. We report the nuclear magnetic resonance (NMR) solution structure of the full-length CR4/5 domain from the teleost fish medaka (Oryzias latipes). Three helices emanate from a structured internal loop, forming a Y-shaped structure, where helix P6 stacks on P5 and helix P6.1 points away from P6. The relative orientations of the three helices are Mg2+ dependent and dynamic. Although the three-way junction is structured and has unexpected base pairs, telomerase activity assays with nucleotide substitutions and deletions in CR4/5 indicate that none of these are essential for activity. The results suggest that the junction is likely to change conformation in complex with telomerase reverse transcriptase and that it provides a flexible scaffold that allows P6 and P6.1 to correctly fold and interact with telomerase reverse transcriptase.
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095-1569, USA, Advanced Analysis Center, Korea Institute of Science and Technology, Seoul, 136-791, Republic of Korea and Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
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