2MFA | pdb_00002mfa

Mambalgin-2


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2MFA

This is version 1.3 of the entry. See complete history

Literature

Chemical synthesis, 3D structure, and ASIC binding site of the toxin mambalgin-2.

Schroeder, C.I.Rash, L.D.Vila-Farres, X.Rosengren, K.J.Mobli, M.King, G.F.Alewood, P.F.Craik, D.J.Durek, T.

(2014) Angew Chem Int Ed Engl 53: 1017-1020

  • DOI: https://doi.org/10.1002/anie.201308898
  • Primary Citation Related Structures: 
    2MFA

  • PubMed Abstract: 

    Mambalgins are a novel class of snake venom components that exert potent analgesic effects mediated through the inhibition of acid-sensing ion channels (ASICs). The 57-residue polypeptide mambalgin-2 (Ma-2) was synthesized by using a combination of solid-phase peptide synthesis and native chemical ligation. The structure of the synthetic toxin, determined using homonuclear NMR, revealed an unusual three-finger toxin fold reminiscent of functionally unrelated snake toxins. Electrophysiological analysis of Ma-2 on wild-type and mutant ASIC1a receptors allowed us to identify α-helix 5, which borders on the functionally critical acidic pocket of the channel, as a major part of the Ma-2 binding site. This region is also crucial for the interaction of ASIC1a with the spider toxin PcTx1, thus suggesting that the binding sites for these toxins substantially overlap. This work lays the foundation for structure-activity relationship (SAR) studies and further development of this promising analgesic peptide.


  • Organizational Affiliation
    • Division of Chemistry and Structural Biology, Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland (Australia).

Macromolecule Content 

  • Total Structure Weight: 6.56 kDa 
  • Atom Count: 450 
  • Modeled Residue Count: 57 
  • Deposited Residue Count: 57 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Mambalgin-257Dendraspis polylepis polylepisMutation(s): 0 
UniProt
Find proteins for P0DKS3 (Dendroaspis polylepis polylepis)
Explore P0DKS3 
Go to UniProtKB:  P0DKS3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DKS3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-01-01
    Type: Initial release
  • Version 1.1: 2016-06-01
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.3: 2024-11-20
    Changes: Data collection, Database references, Structure summary