2ME6 | pdb_00002me6

NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens in complex with the DNA sequence CGACTAATTAGTCG

PDB DOI: https://doi.org/10.2210/pdb2ME6/pdb
NAKB: 2ME6

Classification: TRANSCRIPTION/DNA
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-09-23 Released: 2013-10-30
Deposition Author(s): Proudfoot, A., Serrano, P., Geralt, M., Wuthrich, K., Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 4
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens in complex with the DNA sequence CGACTAATTAGTCG

Proudfoot, A., Wuthrich, K., Serrano, P., Geralt, M.

To be published.

Macromolecule Content

Total Structure Weight: 16.91 kDa
Atom Count: 1,159
Modeled Residue Count: 99
Deposited Residue Count: 99
Unique protein chains: 1
Unique nucleic acid chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Homeobox protein GBX-1	A	71	Homo sapiens	Mutation(s): 0 Gene Names: GBX1
UniProt & NIH Common Fund Data Resources
Find proteins for Q14549 (Homo sapiens) Explore Q14549 Go to UniProtKB: Q14549
PHAROS: Q14549 GTEx: ENSG00000164900
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q14549
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence

Molecule	Chains	Length	Organism	Image
Entity ID: 2
DNA (5'-D(CPGPAPCPTPAPAPTPTPAPGPTPCPG)-3')	B, C	14	N/A
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 4
Selection Criteria: structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-10-30

Deposition Author(s):

Joint Center for Structural Genomics (JCSG)

Partnership for Stem Cell Biology (STEMCELL)

Revision History (Full details and data files)

Version 1.0: 2013-10-30
Type: Initial release
Version 1.1: 2024-05-01
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.