2MDZ | pdb_00002mdz

NMR structure of the Paracoccus denitrificans Z-subunit determined in the presence of ADP

PDB DOI: https://doi.org/10.2210/pdb2MDZ/pdb
BMRB: 19510

Classification: HYDROLASE INHIBITOR
Organism(s): Paracoccus denitrificans PD1222
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-09-20 Released: 2013-10-09
Deposition Author(s): Serrano, P., Geralt, M., Wuthrich, K., Morales-Rios, E., Zarco-Zavala, M., Garcia-Trejo, J.J., Dutta, S.K., Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 80
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2MDZ

This is version 1.3 of the entry. See complete history.

Literature

NMR structure of the putative ATPase regulatory protein YP_916642.1 from Paracoccus denitrificans

Serrano, P., Geralt, M., Wuthrich, K., Dutta, S.K., Morales-Rios, E., Garcia-Trejo, J.J., Zarco-Zavala, M.

To be published.

Macromolecule Content

Total Structure Weight: 11.69 kDa
Atom Count: 820
Modeled Residue Count: 104
Deposited Residue Count: 104
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	104	Paracoccus denitrificans PD1222	Mutation(s): 0 Gene Names: Pden_2862
UniProt
Find proteins for A1B602 (Paracoccus denitrificans (strain Pd 1222)) Explore A1B602 Go to UniProtKB: A1B602
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A1B602
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 80
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-10-09

Deposition Author(s):

Morales-Rios, E.

Zarco-Zavala, M.

Garcia-Trejo, J.J.

Joint Center for Structural Genomics (JCSG)

Revision History (Full details and data files)

Version 1.0: 2013-10-09
Type: Initial release
Version 1.1: 2014-10-08
Changes: Database references, Structure summary
Version 1.2: 2023-06-14
Changes: Data collection, Database references, Other
Version 1.3: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.