2L80 | pdb_00002l80

Solution Structure of the Zinc Finger Domain of USP13

PDB DOI: https://doi.org/10.2210/pdb2L80/pdb
BMRB: 17388

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-12-28 Released: 2011-12-14
Deposition Author(s): Zhang, Y., Zhou, C., Zhou, Z., Song, A., Hu, H.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2L80

This is version 1.2 of the entry. See complete history.

Literature

Biochemical Characterization of the Ubiquitin Receptors in USP13 Reveals Different Catalytic Activation of Deubiquitination from Its Analogue USP5

Zhang, Y., Song, A., Zhou, C., Zhou, Z., Hu, H.

To be published.

Macromolecule Content

Total Structure Weight: 12.91 kDa
Atom Count: 894
Modeled Residue Count: 114
Deposited Residue Count: 116
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin carboxyl-terminal hydrolase 13	A	116	Homo sapiens	Mutation(s): 0 Gene Names: USP13 EC: 3.4.19.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q92995 (Homo sapiens) Explore Q92995 Go to UniProtKB: Q92995
PHAROS: Q92995 GTEx: ENSG00000058056
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92995
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-12-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-12-14
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Derived calculations, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.