2L2Y | pdb_00002l2y

Thiostrepton, epimer form of residue 9

PDB DOI: https://doi.org/10.2210/pdb2L2Y/pdb
BMRB: 17155

Classification: ANTIBIOTIC
Organism(s): Streptomyces azureus
Mutation(s): Yes

Deposited: 2010-08-27 Released: 2011-02-02
Deposition Author(s): Jonker, H.R.A., Baumann, S., Wolf, A., Schoof, S., Hiller, F., Schulte, K.W., Kirschner, K.N., Schwalbe, H., Arndt, H.-D.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2L2Y

This is version 2.0 of the entry. See complete history.

Literature

NMR structures of thiostrepton derivatives for characterization of the ribosomal binding site.

Jonker, H.R., Baumann, S., Wolf, A., Schoof, S., Hiller, F., Schulte, K.W., Kirschner, K.N., Schwalbe, H., Arndt, H.D.

(2011) Angew Chem Int Ed Engl 50: 3308-3312

PubMed: 21365717 Search on PubMed
DOI: https://doi.org/10.1002/anie.201003582
Primary Citation Related Structures:
2L2W, 2L2X, 2L2Y, 2L2Z

Organizational Affiliation

Johann Wolfgang Goethe-Universität, Institute for Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Max-von-Laue-Strasse 7, 60438 Frankfurt am Main, Germany.

Macromolecule Content

Total Structure Weight: 1.74 kDa
Atom Count: 109
Modeled Residue Count: 18
Deposited Residue Count: 18
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thiostrepton	A	18	Streptomyces azureus	Mutation(s): 1
UniProt
Find proteins for P0C8P8 (Streptomyces azureus) Explore P0C8P8 Go to UniProtKB: P0C8P8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0C8P8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 5 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
BB9 Query on BB9	A	PEPTIDE LINKING	C₃ H₅ N O₂ S		CYS
DBU Query on DBU	A	PEPTIDE LINKING	C₄ H₇ N O₂		THR
DHA Query on DHA	A	PEPTIDE LINKING	C₃ H₅ N O₂		SER
MH6 Query on MH6	A	PEPTIDE LINKING	C₃ H₅ N O₃		SER
TS9 Query on TS9	A	L-PEPTIDE LINKING	C₆ H₁₃ N O₄		ILE

Biologically Interesting Molecules (External Reference)

1 Unique

Entity ID: 1
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_000759 Query on PRD_000759	A	THIOPEPTIDE THIOSTREPTON WITH EPIMER FORM OF RESIDUE 9	Thiopeptide / Antibiotic		Interactions Focus chain A

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-02-02

Deposition Author(s):

Kirschner, K.N.

Revision History (Full details and data files)

Version 1.0: 2011-02-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2012-12-12
Changes: Other
Version 1.3: 2013-06-26
Changes: Database references
Version 2.0: 2025-03-26
Changes: Data collection, Database references, Derived calculations, Polymer sequence, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.