2KK2 | pdb_00002kk2

NMR solution structure of the pheromone En-A1 from Euplotes nobilii


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 80 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Antarctic and Arctic populations of the ciliate Euplotes nobilii show common pheromone-mediated cell-cell signaling and cross-mating.

Di Giuseppe, G.Erra, F.Dini, F.Alimenti, C.Vallesi, A.Pedrini, B.Wuthrich, K.Luporini, P.

(2011) Proc Natl Acad Sci U S A 108: 3181-3186

  • DOI: https://doi.org/10.1073/pnas.1019432108
  • Primary Citation Related Structures: 
    2KK2

  • PubMed Abstract: 

    Wild-type strains of the protozoan ciliate Euplotes collected from different locations on the coasts of Antarctica, Tierra del Fuego and the Arctic were taxonomically identified as the morpho-species Euplotes nobilii, based on morphometric and phylogenetic analyses. Subsequent studies of their sexual interactions revealed that mating combinations of Antarctic and Arctic strains form stable pairs of conjugant cells. These conjugant pairs were isolated and shown to complete mutual gene exchange and cross-fertilization. The biological significance of this finding was further substantiated by demonstrating that close homology exists among the three-dimensional structures determined by NMR of the water-borne signaling pheromones that are constitutively secreted into the extracellular space by these interbreeding strains, in which these molecules trigger the switch between the growth stage and the sexual stage of the life cycle. The fact that Antarctic and Arctic E. nobilii populations share the same gene pool and belong to the same biological species provides new support to the biogeographic model of global distribution of eukaryotic microorganisms, which had so far been based exclusively on studies of morphological and phylogenetic taxonomy.


  • Organizational Affiliation
    • Dipartimento di Biologia, University of Pisa, 56126 Pisa, Italy.

Macromolecule Content 

  • Total Structure Weight: 6.52 kDa 
  • Atom Count: 447 
  • Modeled Residue Count: 61 
  • Deposited Residue Count: 61 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
En-A161Euplotes nobiliiMutation(s): 0 
UniProt
Find proteins for C4NXD5 (Euplotes nobilii)
Explore C4NXD5 
Go to UniProtKB:  C4NXD5
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC4NXD5
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 80 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-05-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2020-02-26
    Changes: Data collection, Database references, Other
  • Version 1.3: 2023-06-14
    Changes: Database references, Other
  • Version 1.4: 2024-10-30
    Changes: Data collection, Database references, Structure summary