2KI3 | pdb_00002ki3

Structural and biochemical characterization of FK506 binding domain from Plasmodium vivax

PDB DOI: https://doi.org/10.2210/pdb2KI3/pdb
BMRB: 16260

Classification: ISOMERASE
Organism(s): Plasmodium vivax
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-04-21 Released: 2010-04-14
Deposition Author(s): Alag, R., Yoon, H.S., Shin, J.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

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This is version 1.3 of the entry. See complete history.

Literature

NMR assignments of the FK506-binding domain of FK506-binding protein 35 from Plasmodium vivax

Alag, R., Shin, J., Yoon, H.S.

(2009) Biomol NMR Assign 3: 243-245

PubMed: 19774494 Search on PubMed
DOI: https://doi.org/10.1007/s12104-009-9185-1
Primary Citation Related Structures:
2KI3

PubMed Abstract:
PvFKBP35 is a member of the FK506 binding protein family (FKBP) from Plasmodium vivax. The FK506-binding domain of PvFKBP35 shows a canonical peptidylprolyl cis-trans isomerase (PPIase) activity. To understand the role of PvFKBP35 in the parasite, we have performed NMR studies. Here, we report the assignment of the FK506-binding domain of PvFKBP35.

Organizational Affiliation

School of Biological Science, Nanyang Technological University, Singapore, Singapore.

Macromolecule Content

Total Structure Weight: 13.97 kDa
Atom Count: 978
Modeled Residue Count: 126
Deposited Residue Count: 126
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
70 kDa peptidylprolyl isomerase, putative	A	126	Plasmodium vivax	Mutation(s): 0 EC: 5.2.1.8
UniProt
Find proteins for A5K8X6 (Plasmodium vivax (strain Salvador I)) Explore A5K8X6 Go to UniProtKB: A5K8X6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A5K8X6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-04-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-04-14
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.