2KD8

Solution structure of the stem-loop IIId of GBV-B IRES

• PDB DOI: https://doi.org/10.2210/pdb2KD8/pdb
• NAKB: 2KD8

• Classification: RNA
• Mutation(s): No 


• Deposited: 2009-01-04 Released: 2010-01-19 
• Deposition Author(s): Thiviyanathan, V., Kulasegran Shylini, R., Gorenstein, D.G., kaluarachchi, K.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 10 
• Conformers Submitted: 12 
• Selection Criteria: structures with the lowest energy 

Literature

Solution structure of the stem-loop IIId of GBV-B IRES

Thiviyanathan, V., Kulasegran Shylini, R., kaluarachchi, K., Lemon, S., Gorenstein, D.G.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 7.11 kDa 
• Atom Count: 470 
• Modelled Residue Count: 22 
• Deposited Residue Count: 22 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
5'-R(*GP*GP*AP*UP*GP*GP*UP*UP*GP*GP*GP*GP*UP*UP*AP*GP*CP*CP*AP*UP*CP*C)-3'	A	22	N/A

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 10 
• Conformers Submitted: 12 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-01-19 
Deposition Author(s): Thiviyanathan, V., Kulasegran Shylini, R., Gorenstein, D.G., kaluarachchi, K.

Revision History  

• Version 1.0: 2010-01-19
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations
• Version 1.3: 2024-05-22
  Changes: Data collection