2K41 | pdb_00002k41

NMR structure of uridine bulged RNA duplex

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history. 

Literature

Structure and dynamics of adenosine bulged RNA duplex reveals formation of the dinucleotide platform in the C:G-A triple

Popenda, L., Bielecki, L., Gdaniec, Z., Adamiak, R.W.

(2008) ARKIVOC 2009: 130-144

Macromolecule Content 

  • Total Structure Weight: 5.39 kDa 
  • Atom Count: 356 
  • Modeled Residue Count: 17 
  • Deposited Residue Count: 17 
  • Unique nucleic acid chains: 2

Macromolecules

Find similar nucleic acids by:  Sequence
Entity ID: 1
MoleculeChains LengthOrganismImage
RNA_(5'-R(*GP*UP*CP*GP*UP*GP*CP*UP*G)-3')_9N/A
Sequence Annotations
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Reference Sequence
Find similar nucleic acids by:  Sequence
Entity ID: 2
MoleculeChains LengthOrganismImage
RNA_(5'-R(*CP*AP*GP*CP*CP*GP*AP*C)-3')_8N/A
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-11-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2022-03-16
    Changes: Data collection, Database references, Derived calculations
  • Version 1.3: 2024-05-29
    Changes: Data collection