2K3J | pdb_00002k3j

The solution structure of human Mia40


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 2K3J

This is version 1.4 of the entry. See complete history

Literature

MIA40 is an oxidoreductase that catalyzes oxidative protein folding in mitochondria.

Banci, L.Bertini, I.Cefaro, C.Ciofi-Baffoni, S.Gallo, A.Martinelli, M.Sideris, D.P.Katrakili, N.Tokatlidis, K.

(2009) Nat Struct Mol Biol 16: 198-206

  • DOI: https://doi.org/10.1038/nsmb.1553
  • Primary Citation Related Structures: 
    2K3J

  • PubMed Abstract: 

    MIA40 has a key role in oxidative protein folding in the mitochondrial intermembrane space. We present the solution structure of human MIA40 and its mechanism as a catalyst of oxidative folding. MIA40 has a 66-residue folded domain made of an alpha-helical hairpin core stabilized by two structural disulfides and a rigid N-terminal lid, with a characteristic CPC motif that can donate its disulfide bond to substrates. The CPC active site is solvent-accessible and sits adjacent to a hydrophobic cleft. Its second cysteine (Cys55) is essential in vivo and is crucial for mixed disulfide formation with the substrate. The hydrophobic cleft functions as a substrate binding domain, and mutations of this domain are lethal in vivo and abrogate binding in vitro. MIA40 represents a thioredoxin-unrelated, minimal oxidoreductase, with a facile CPC redox active site that ensures its catalytic function in oxidative folding in mitochondria.


  • Organizational Affiliation
    • Magnetic Resonance Center CERM, University of Florence, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Florence, Italy.

Macromolecule Content 

  • Total Structure Weight: 16.4 kDa 
  • Atom Count: 501 
  • Modeled Residue Count: 65 
  • Deposited Residue Count: 146 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitochondrial intermembrane space import and assembly protein 40146Homo sapiensMutation(s): 0 
Gene Names: CHCHD4MIA40
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N4Q1 (Homo sapiens)
Explore Q8N4Q1 
Go to UniProtKB:  Q8N4Q1
PHAROS:  Q8N4Q1
GTEx:  ENSG00000163528 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N4Q1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-02-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2020-02-19
    Changes: Data collection, Database references, Derived calculations, Other
  • Version 1.3: 2023-06-14
    Changes: Database references, Other
  • Version 1.4: 2024-11-20
    Changes: Data collection, Database references, Structure summary