2JXN | pdb_00002jxn

Solution Structure of S. cerevisiae PDCD5-like Protein Ymr074cp

PDB DOI: https://doi.org/10.2210/pdb2JXN/pdb
Entry: 2JXN supersedes: 2HVU
BMRB: 15562

Classification: UNKNOWN FUNCTION
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2007-11-23 Released: 2008-12-02
Deposition Author(s): Hong, J., Zhang, J., Liu, Z., Shi, Y., Wu, J.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 400
Conformers Submitted: 20
Selection Criteria: back calculated data agree with experimental NOESY spectrum

wwPDB Validation 3D Report Full Report

Validation slider image for 2JXN

This is version 1.3 of the entry. See complete history.

Literature

Solution Structure and Dynamics of S. cerevisiae PDCD5-like Protein Ymr074cp Determined by Heteronuclear NMR Spectroscopy

Hong, J., Zhang, J., Liu, Z., Wu, J., Shi, Y.

To be published.

Macromolecule Content

Total Structure Weight: 14.39 kDa
Atom Count: 903
Modeled Residue Count: 116
Deposited Residue Count: 127
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein YMR074C	A	127	Saccharomyces cerevisiae	Mutation(s): 2 Gene Names: YMR074C
UniProt
Find proteins for Q04773 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04773 Go to UniProtKB: Q04773
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q04773
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MTN Query on MTN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] mmCIF format, chain B [auth A] mmCIF format, chain C [auth A]	B [auth A], C [auth A]	S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate C₁₀ H₁₈ N O₃ S₂ MXZPGYFBZHBAQM-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 400
Conformers Submitted: 20
Selection Criteria: back calculated data agree with experimental NOESY spectrum

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-12-02

Deposition Author(s):

This entry supersedes: 2HVU

Revision History (Full details and data files)

Version 1.0: 2008-12-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance
Version 1.2: 2021-10-20
Changes: Advisory, Data collection, Database references, Derived calculations
Version 1.3: 2024-11-20
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.