2JV6 | pdb_00002jv6

YF ED3 Protein NMR Structure

PDB DOI: https://doi.org/10.2210/pdb2JV6/pdb

Classification: VIRAL PROTEIN
Organism(s): Yellow fever virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-09-12 Released: 2008-09-16
Deposition Author(s): Volk, D.E., Gandham, S.H.A., May, F.J., Anderson, A., Barrett, A.D.T., Gorenstein, D.G.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 2JV6

This is version 1.3 of the entry. See complete history.

Literature

Yellow Fever Virus Envelope Protein Domain III: A Convergence of Structure and Phylogenetics

Volk, D.E., May, F.J., Gandham, S.H.A., Anderson, A., Von Lindern, J.J., Beasley, D.W., Barrett, A.D.T., Gorenstein, D.G.

To be published.

Macromolecule Content

Total Structure Weight: 11.95 kDa
Atom Count: 835
Modeled Residue Count: 112
Deposited Residue Count: 112
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelope protein E	A	112	Yellow fever virus	Mutation(s): 0
UniProt
Find proteins for Q6DV88 (Yellow fever virus (strain Ghana/Asibi/1927)) Explore Q6DV88 Go to UniProtKB: Q6DV88
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6DV88
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-09-16

Deposition Author(s):

Gandham, S.H.A.

Barrett, A.D.T.

Gorenstein, D.G.

Revision History (Full details and data files)

Version 1.0: 2008-09-16
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-11-27
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.