2JSA

Solution structure of Caenopore-5 (81 Pro Trans confomer)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Caenopore-5: the three-dimensional structure of an antimicrobial protein from Caenorhabditis elegans.

Mysliwy, J.Dingley, A.J.Stanisak, M.Jung, S.Lorenzen, I.Roeder, T.Leippe, M.Grotzinger, J.

(2010) Dev Comp Immunol 34: 323-330

  • DOI: https://doi.org/10.1016/j.dci.2009.11.003
  • Primary Citation of Related Structures:  
    2JS9, 2JSA

  • PubMed Abstract: 

    The caenopore-5 protein encoded by the spp-5 gene is one of the 33 caenopores identified in Caenorhabditis elegans and is a pore-forming peptide which plays an important role in the elimination of Escherichia coli ingested by the worm. Thus, caenopore-5 appears to contribute to the nutrition of the worm while simultaneously protecting the organism against pathogens. Here, three-dimensional heteronuclear NMR spectroscopy was used to solve the solution structure of caenopore-5. The NMR data revealed that two conformers of caenopore-5 exist in solution which differ by the isomerization of the peptide bond of Pro-81. The overall structure of the two caenopore-5 conformers consists of five amphiphatic helices connected by three disulfide bonds. The five helices are arranged in a folded leaf which is the characteristic signature of the SAPLIP family. The structure presented here is the first of an effector protein of the defensive system elucidated for the well-known model organism C. elegans.


  • Organizational Affiliation

    Institute of Biochemistry, Christian-Albrechts-University Kiel, Olshausenstr. 40, 24098 Kiel, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Saposin-like protein family protein 599Caenorhabditis elegansMutation(s): 0 
Gene Names: spp-5
Membrane Entity: Yes 
UniProt
Find proteins for Q86FL8 (Caenorhabditis elegans)
Explore Q86FL8 
Go to UniProtKB:  Q86FL8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86FL8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 400 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-10-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2022-03-16
    Changes: Database references, Derived calculations