2JRZ

Solution structure of the Bright/ARID domain from the human JARID1C protein.

• PDB DOI: https://doi.org/10.2210/pdb2JRZ/pdb
• BMRB: 15348

• Classification: OXIDOREDUCTASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-06-29 Released: 2007-07-10 
• Deposition Author(s): Koehler, C., Bishop, S., Dowler, E.F., Diehl, A., Schmieder, P., Leidert, M., Sundstrom, M., Arrowsmith, C.H., Wiegelt, J., Edwards, A., Oschkinat, H., Ball, L.J., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Backbone and sidechain 1H, 13C and 15N resonance assignments of the Bright/ARID domain from the human JARID1C (SMCX) protein.

Koehler, C., Bishop, S., Dowler, E.F., Schmieder, P., Diehl, A., Oschkinat, H., Ball, L.J.

(2008) Biomol NMR Assign 2: 9-11

• PubMed: 19636912 
• DOI: https://doi.org/10.1007/s12104-007-9071-7
• Primary Citation of Related Structures:  
  2JRZ


• PubMed Abstract: 
  

  We have assigned 1H, 13C and 15N resonances of the Bright/ARID DNA-binding domain from the human JARID1C protein, a newly discovered histone demethylase belonging to the JmjC domain-containing protein family.

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Organizational Affiliation: 

Leibniz-Institut für Molekulare Pharmakologie (FMP), Robert-Rössle-Str. 10, 13125 Berlin, Germany.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 13.75 kDa 
• Atom Count: 967 
• Modelled Residue Count: 117 
• Deposited Residue Count: 117 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone demethylase JARID1C	A	117	Homo sapiens	Mutation(s): 0  Gene Names: JARID1C, DXS1272E, SMCX, XE169 EC: 1.14.11 (PDB Primary Data), 1.14.11.67 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P41229 (Homo sapiens) Explore P41229  Go to UniProtKB:  P41229
PHAROS:  P41229 GTEx:  ENSG00000126012

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-07-10 
Deposition Author(s): Koehler, C., Bishop, S., Dowler, E.F., Diehl, A., Schmieder, P., Leidert, M., Sundstrom, M., Arrowsmith, C.H., Wiegelt, J., Edwards, A., Oschkinat, H., Ball, L.J., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2007-07-10
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2020-02-19
  Changes: Data collection, Database references, Derived calculations, Other
• Version 1.4: 2023-06-14
  Changes: Database references, Other
• Version 1.5: 2024-05-08
  Changes: Data collection, Database references