2JQ2 | pdb_00002jq2

NMR structure of the anticoccidial peptide PW2 in DPC micelles


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 18 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2JQ2

This is version 1.5 of the entry. See complete history

Literature

Effect of micelle interface on the binding of anticoccidial PW2 peptide

Tinoco, L.W.Gomes-Neto, F.Valente, A.P.Almeida, F.C.

(2007) J Biomol NMR 39: 315-322

  • DOI: https://doi.org/10.1007/s10858-007-9202-6
  • Primary Citation Related Structures: 
    2JQ2

  • PubMed Abstract: 

    PW2 is an anticoccidial peptide active against Eimeria acervulina and Eimeria tenella. We determined the structure of PW2 in dodecylphosphocholine micelles. The structure showed two distinct regions: an amphipathic N-terminal 3(10) helix and an aromatic region containing WWR interface-binding motif. The aromatic region acted as a scaffold of the protein in the interface and shared the same structure in both DPC and SDS micelles. N-terminal helix interacted with DPC but not with SDS interface. Chemical shift change was slow when SDS was added to PW2 in DPC and fast when DPC was added to PW2 in SDS, indicating that interaction with DPC micelles was kinetically more stable than with SDS micelles. Also, DPC interface was able to accommodate PW2, but it maintained the conformational arrangement in the aromatic region observed for SDS micelles. This behavior, which is different from that observed for other antimicrobial peptides with WWR motif, may be associated with the absence of PW2 antibacterial activity and its selectivity for Eimeria parasites.


  • Organizational Affiliation
    • Nucleo de Pesquisas de Produtos Naturais, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-590, Brazil.

Macromolecule Content 

  • Total Structure Weight: 1.61 kDa 
  • Atom Count: 116 
  • Modeled Residue Count: 12 
  • Deposited Residue Count: 12 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
pw212synthetic constructMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 18 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-10-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2020-02-19
    Changes: Database references, Derived calculations, Other, Source and taxonomy
  • Version 1.3: 2023-06-14
    Changes: Database references, Other
  • Version 1.4: 2023-12-20
    Changes: Data collection, Other
  • Version 1.5: 2024-05-08
    Changes: Database references