2JM3 | pdb_00002jm3

Solution structure of the THAP domain from C. elegans C-terminal binding protein (CtBP)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 20 
  • Selection Criteria: lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Solution structure of the THAP domain from Caenorhabditis elegans C-terminal binding protein (CtBP).

Liew, C.K.Crossley, M.Mackay, J.P.Nicholas, H.R.

(2007) J Mol Biology 366: 382-390

  • DOI: https://doi.org/10.1016/j.jmb.2006.11.058
  • Primary Citation Related Structures: 
    2JM3

  • PubMed Abstract: 

    The THAP (Thanatos-associated protein) domain is a recently discovered zinc-binding domain found in proteins involved in transcriptional regulation, cell-cycle control, apoptosis and chromatin modification. It contains a single zinc atom ligated by cysteine and histidine residues within a Cys-X(2-4)-Cys-X(35-53)-Cys-X(2)-His consensus. We have determined the NMR solution structure of the THAP domain from Caenorhabditis elegans C-terminal binding protein (CtBP) and show that it adopts a fold containing a treble clef motif, bearing similarity to the zinc finger-associated domain (ZAD) from Drosophila Grauzone. The CtBP THAP domain contains a large, positively charged surface patch and we demonstrate that this domain can bind to double-stranded DNA in an electrophoretic mobility-shift assay. These data, together with existing reports, indicate that THAP domains might exhibit a functional diversity similar to that observed for classical and GATA-type zinc fingers.


  • Organizational Affiliation
    • School of Molecular and Microbial Biosciences, University of Sydney, Sydney, New South Wales 2006, Australia. ckliew@mmb.usyd.edu.au

Macromolecule Content 

  • Total Structure Weight: 10.59 kDa 
  • Atom Count: 740 
  • Modeled Residue Count: 91 
  • Deposited Residue Count: 91 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Hypothetical protein91Caenorhabditis elegansMutation(s): 0 
Gene Names: F49E10.5
UniProt
Find proteins for Q20595 (Caenorhabditis elegans)
Explore Q20595 
Go to UniProtKB:  Q20595
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ20595
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN

Query on ZN



Download:Ideal Coordinates CCD File
B [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 20 
  • Selection Criteria: lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-02-06
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-09
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-29
    Changes: Data collection