2JFK | pdb_00002jfk

Structure of the MAT domain of human FAS with malonyl-CoA

PDB DOI: https://doi.org/10.2210/pdb2JFK/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-02-02 Released: 2007-03-13
Deposition Author(s): Bunkoczi, G., Kavanagh, K., Hozjan, V., Rojkova, A., Watt, S., Wu, X., Arrowsmith, C.H., Edwards, A., Sundstrom, M., Weigelt, J., Smith, S., Oppermann, U.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.271 (Depositor)
R-Value Work:
0.222 (Depositor)
R-Value Observed:
0.224 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

Structure of the MAT Domain of Human Fas with Malonyl-Coa

Bunkoczi, G., Kavanagh, K., Hozjan, V., Rojkova, A., Watt, S., Wu, X., Arrowsmith, C.H., Edwards, A., Sundstrom, M., Weigelt, J., Smith, S., Oppermann, U.

To be published.

Macromolecule Content

Total Structure Weight: 193.65 kDa
Atom Count: 12,143
Modeled Residue Count: 1,620
Deposited Residue Count: 1,732
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FATTY ACID SYNTHASE	A, B, C, D	433	Homo sapiens	Mutation(s): 0 EC: 2.3.1.85 (PDB Primary Data), 2.3.1.41 (UniProt), 3.1.2.14 (UniProt), 1.3.1.39 (UniProt), 2.3.1.38 (UniProt), 4.2.1.59 (UniProt), 1.1.1.100 (UniProt), 2.3.1.39 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P49327 (Homo sapiens) Explore P49327 Go to UniProtKB: P49327
PHAROS: P49327 GTEx: ENSG00000169710
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P49327
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
COA Query on COA Download:Ideal Coordinates CCD File SDF format, chain H [auth D] SDF format, chain G [auth C] SDF format, chain F [auth B] SDF format, chain E [auth A] MOL2 format, chain H [auth D] MOL2 format, chain G [auth C] MOL2 format, chain F [auth B] MOL2 format, chain E [auth A] mmCIF format, chain H [auth D] mmCIF format, chain G [auth C] mmCIF format, chain F [auth B] mmCIF format, chain E [auth A]	E [auth A], F [auth B], G [auth C], H [auth D]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MCS Query on MCS	A, B, C, D	L-PEPTIDE LINKING	C₆ H₉ N O₅ S		CYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.271 (Depositor)
R-Value Work: 0.222 (Depositor)
R-Value Observed: 0.224 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.917	α = 90
b = 91.41	β = 90
c = 261.609	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2007-03-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-03-13
Type: Initial release
Version 1.1: 2011-07-13
Changes: Refinement description, Version format compliance
Version 1.2: 2018-02-28
Changes: Source and taxonomy
Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description