2IQI | pdb_00002iqi

Crystal structure of protein XCC0632 from Xanthomonas campestris, Pfam DUF330

PDB DOI: https://doi.org/10.2210/pdb2IQI/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Xanthomonas campestris pv. campestris
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2006-10-13 Released: 2006-11-07
Deposition Author(s): Bonanno, J.B., Gilmore, J., Bain, K.T., Mckenzie, C., Pelletier, L., Wasserman, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.275 (Depositor), 0.268 (DCC)
R-Value Work:
0.209 (Depositor), 0.208 (DCC)
R-Value Observed:
0.211 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2IQI

This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of hypothetical protein XCC0632 from Xanthomonas campestris pv. campestris

Bonanno, J.B., Gilmore, J., Bain, K.T., Mckenzie, C., Pelletier, L., Wasserman, S., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 164.8 kDa
Atom Count: 10,680
Modeled Residue Count: 1,375
Deposited Residue Count: 1,536
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein XCC0632	A, B, C, D, E A, B, C, D, E, F, G, H	192	Xanthomonas campestris pv. campestris	Mutation(s): 0 Gene Names: XCC0632
UniProt
Find proteins for Q8PCT0 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8PCT0 Go to UniProtKB: Q8PCT0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8PCT0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.275 (Depositor), 0.268 (DCC)
R-Value Work: 0.209 (Depositor), 0.208 (DCC)
R-Value Observed: 0.211 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 155.933	α = 90
b = 103.114	β = 90
c = 121.65	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
MOSFLM	data reduction
CCP4	data scaling
SHELXD	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-11-07

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2006-11-07
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-18
Changes: Refinement description
Version 1.4: 2021-02-03
Changes: Database references, Structure summary
Version 1.5: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.