2IJQ

Crystal structure of protein rrnAC1037 from Haloarcula marismortui, Pfam DUF309

• PDB DOI: https://doi.org/10.2210/pdb2IJQ/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Haloarcula marismortui
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2006-09-30 Released: 2006-10-24 
• Deposition Author(s): Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free: 0.256 
• R-Value Work: 0.197 
• R-Value Observed: 0.200 

Literature

Crystal structure of the hypothetical Protein from Haloarcula marismortui

Malashkevich, V.N., Toro, R., Sauder, J.M., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Schwinn, K.D., Emtage, S., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 37.14 kDa 
• Atom Count: 2,474 
• Modelled Residue Count: 263 
• Deposited Residue Count: 322 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein	A, B	161	Haloarcula marismortui	Mutation(s): 0
UniProt
Find proteins for Q5V3A0 (Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)) Explore Q5V3A0  Go to UniProtKB:  Q5V3A0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free: 0.256 
• R-Value Work: 0.197 
• R-Value Observed: 0.200 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.71	α = 90
b = 57.77	β = 90
c = 107.6	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SHELX	refinement
DENZO	data reduction
PDB_EXTRACT	data extraction
CBASS	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
SHELXD	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-10-24 
Deposition Author(s): Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2006-10-24
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description
• Version 1.4: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.5: 2019-07-24
  Changes: Data collection, Refinement description
• Version 1.6: 2021-02-03
  Changes: Database references, Structure summary
• Version 1.7: 2024-02-21
  Changes: Data collection, Database references