2IIK | pdb_00002iik

Crystal Structure of human peroxisomal acetyl-CoA acyl transferase 1 (ACAA1)

PDB DOI: https://doi.org/10.2210/pdb2IIK/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2006-09-28 Released: 2006-10-10
Deposition Author(s): Papagrigoriou, E., Johansson, C., Smee, C., Kavanagh, K., Pike, A.C.W., Sundstrom, M., Weigelt, J., Edwards, A., Arrowsmith, C.H., Gileadi, O., Gorrec, F., Umeano, C., von Delft, F., Oppermann, U., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free:
0.223 (Depositor), 0.224 (DCC)
R-Value Work:
0.179 (Depositor), 0.180 (DCC)
R-Value Observed:
0.181 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of human peroxisomal acetyl-CoA acyl transferase 1 (ACAA1)

Papagrigoriou, E., Johansson, C., Smee, C., Kavanagh, K., Pike, A.C.W., Sundstrom, M., Weigelt, J., Edwards, A., Arrowsmith, C.H., Gileadi, O., Gorrec, F., Umeano, C., von Delft, F., Oppermann, U., Structural Genomics Consortium (SGC)

To be published.

Macromolecule Content

Total Structure Weight: 87.94 kDa
Atom Count: 5,873
Modeled Residue Count: 786
Deposited Residue Count: 836
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-ketoacyl-CoA thiolase, peroxisomal	A, B	418	Homo sapiens	Mutation(s): 0 Gene Names: ACAA1 EC: 2.3.1.16 (PDB Primary Data), 2.3.1.155 (UniProt), 2.3.1.9 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P09110 (Homo sapiens) Explore P09110 Go to UniProtKB: P09110
PHAROS: P09110 GTEx: ENSG00000060971
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P09110
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free: 0.223 (Depositor), 0.224 (DCC)
R-Value Work: 0.179 (Depositor), 0.180 (DCC)
R-Value Observed: 0.181 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.147	α = 90
b = 96.845	β = 90
c = 142.055	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
MLPHARE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-10-10

Deposition Author(s):

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2006-10-10
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.3: 2023-08-30
Changes: Data collection, Database references, Refinement description