2IDG | pdb_00002idg

Crystal Structure of hypothetical protein AF0160 from Archaeoglobus fulgidus

PDB DOI: https://doi.org/10.2210/pdb2IDG/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Archaeoglobus fulgidus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-09-15 Released: 2006-11-14
Deposition Author(s): Zhao, M., Zhang, M., Chang, J., Chen, L., Xu, H., Li, Y., Liu, Z.J., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.69 Å
R-Value Free:
0.297 (Depositor), 0.300 (DCC)
R-Value Work:
0.244 (Depositor), 0.258 (DCC)
R-Value Observed:
0.247 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2IDG

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of Hypothetical Protein AF0160 from Archaeoglobus fulgidus at 2.69 Angstrom resolution

Zhao, M., Zhang, M., Chang, J., Chen, L., Xu, H., Li, Y., Liu, Z.J., Rose, J.P., Wang, B.C.

To be published.

Macromolecule Content

Total Structure Weight: 61.77 kDa
Atom Count: 4,006
Modeled Residue Count: 487
Deposited Residue Count: 525
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein AF0160	A, B, C	175	Archaeoglobus fulgidus	Mutation(s): 5 Gene Names: AF_0160
UniProt
Find proteins for O30077 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O30077 Go to UniProtKB: O30077
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O30077
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.69 Å
R-Value Free: 0.297 (Depositor), 0.300 (DCC)
R-Value Work: 0.244 (Depositor), 0.258 (DCC)
R-Value Observed: 0.247 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.187	α = 90
b = 69.744	β = 90
c = 133.978	γ = 90

Software Package:

Software Name	Purpose
Sca2Structure	model building
REFMAC	refinement
SERGUI	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
SCA2STRUCTURE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2006-11-14

Deposition Author(s):

Southeast Collaboratory for Structural Genomics (SECSG)

Revision History (Full details and data files)

Version 1.0: 2006-11-14
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-09-13
Changes: Advisory, Refinement description
Version 1.4: 2024-10-16
Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.