Iterative Structure-Based Design of a Green Fluorescent Protein Metal Ion Reporter
Barondeau, D.P., Tubbs, J.L., Tainer, J.A., Getzoff, E.D.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Green fluorescent protein | 236 | Aequorea victoria | Mutation(s): 3  | ||
UniProt | |||||
Find proteins for P42212 (Aequorea victoria) Explore P42212  Go to UniProtKB:  P42212 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P42212 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | B [auth A], C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
CRO Query on CRO | A | L-PEPTIDE LINKING | C15 H17 N3 O5 | THR, TYR, GLY |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 51.449 | α = 90 |
b = 62.125 | β = 90 |
c = 71.273 | γ = 90 |
Software Name | Purpose |
---|---|
AMoRE | phasing |
SHELXL-97 | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |