2HE0 | pdb_00002he0

Crystal structure of a human Notch1 ankyrin domain mutant

PDB DOI: https://doi.org/10.2210/pdb2HE0/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-06-21 Released: 2006-07-04
Deposition Author(s): Gupta, D., Ehebauer, M.T., Chirgadze, D.Y., Martinez Arias, A., Blundell, T.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.231 (Depositor), 0.231 (DCC)
R-Value Work:
0.188 (Depositor), 0.188 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2HE0

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of a human Notch1 ankyrin domain mutant

Gupta, D., Ehebauer, M.T., Chirgadze, D.Y., Martinez Arias, A., Blundell, T.L.

To be published.

Macromolecule Content

Total Structure Weight: 55.33 kDa
Atom Count: 3,389
Modeled Residue Count: 388
Deposited Residue Count: 506
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Notch1 preproprotein variant	A, B	253	Homo sapiens	Mutation(s): 2 Gene Names: Notch 1
UniProt & NIH Common Fund Data Resources
Find proteins for P46531 (Homo sapiens) Explore P46531 Go to UniProtKB: P46531
PHAROS: P46531 GTEx: ENSG00000148400
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P46531
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.231 (Depositor), 0.231 (DCC)
R-Value Work: 0.188 (Depositor), 0.188 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.982	α = 90
b = 96.982	β = 90
c = 108.719	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-07-04

Deposition Author(s):

Chirgadze, D.Y.

Martinez Arias, A.

Revision History (Full details and data files)

Version 1.0: 2006-07-04
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-10-20
Changes: Database references, Derived calculations
Version 1.4: 2023-08-30
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.