2H8O | pdb_00002h8o

The 1.6A crystal structure of the geranyltransferase from Agrobacterium tumefaciens

• PDB DOI: https://doi.org/10.2210/pdb2H8O/pdb

• Classification: TRANSFERASE
• Organism(s): Agrobacterium fabrum str. C58
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2006-06-07 Released: 2006-07-04 
• Deposition Author(s): Zhang, R., Xu, X., Gu, J., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 
  0.188 (Depositor), 0.198 (DCC) 
• R-Value Work: 
  0.168 (Depositor), 0.175 (DCC) 
• R-Value Observed: 
  0.169 (Depositor) 

Literature

The 1.6A crystal structure of the geranyltransferase from Agrobacterium tumefaciens

Zhang, R., Xu, X., Gu, J., Savchenko, A., Edwards, A., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 35.82 kDa 
• Atom Count: 2,467 
• Modeled Residue Count: 283 
• Deposited Residue Count: 335 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Geranyltranstransferase	A	335	Agrobacterium fabrum str. C58	Mutation(s): 0  Gene Names: ispA EC: 2.5.1.10
UniProt
Find proteins for Q7CWE5 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore Q7CWE5  Go to UniProtKB:  Q7CWE5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free:  0.188 (Depositor), 0.198 (DCC) 
• R-Value Work:  0.168 (Depositor), 0.175 (DCC) 
• R-Value Observed: 0.169 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.341	α = 90
b = 79.807	β = 90
c = 51.85	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-2000	data scaling
HKL-3000	phasing
SHELXE	model building
SOLVE	phasing
RESOLVE	phasing
ARP/wARP	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-07-04 
Deposition Author(s): Zhang, R., Xu, X., Gu, J., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2006-07-04
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Derived calculations, Source and taxonomy, Version format compliance
• Version 1.3: 2024-02-14
  Changes: Data collection, Database references