2H3R | pdb_00002h3r

Crystal structure of ORF52 from Murid herpesvirus 4 (MuHV-4) (Murine gammaherpesvirus 68). Northeast Structural Genomics Consortium target MhR28B.

PDB DOI: https://doi.org/10.2210/pdb2H3R/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Murid gammaherpesvirus 4
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-05-23 Released: 2006-08-15
Deposition Author(s): Benach, J., Chen, Y., Seetharaman, J., Janjua, H., Xiao, R., Cunningham, K., Ma, L.-C., Ho, C.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.295 (Depositor), 0.316 (DCC)
R-Value Work:
0.275 (Depositor), 0.292 (DCC)
R-Value Observed:
0.275 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of ORF52 from Murid herpesvirus 4 (MuHV-4) (Murine gammaherpesvirus 68). Northeast Structural Genomics Consortium target MhR28B.

Benach, J., Chen, Y., Seetharaman, J., Janjua, H., Xiao, R., Cunningham, K., Ma, L.-C., Ho, C.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published.

Macromolecule Content

Total Structure Weight: 50.07 kDa
Atom Count: 2,779
Modeled Residue Count: 355
Deposited Residue Count: 440
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein BQLF2	A, B, C, D	110	Murid gammaherpesvirus 4	Mutation(s): 4 Gene Names: BQLF2, GAMMAHV.ORF52
UniProt
Find proteins for P88989 (Murid herpesvirus 4) Explore P88989 Go to UniProtKB: P88989
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P88989
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.295 (Depositor), 0.316 (DCC)
R-Value Work: 0.275 (Depositor), 0.292 (DCC)
R-Value Observed: 0.275 (Depositor)

Space Group: P 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.926	α = 90
b = 49.24	β = 105.61
c = 88.915	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SnB	phasing
RESOLVE	phasing
CNS	refinement
PDB_EXTRACT	data extraction
ADSC	data collection

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2006-08-15

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2006-08-15
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-18
Changes: Refinement description
Version 1.4: 2024-11-13
Changes: Data collection, Database references, Derived calculations, Structure summary