2H0A | pdb_00002h0a

Crystal structure of probable Transcription regulator from Thermus thermophilus

PDB DOI: https://doi.org/10.2210/pdb2H0A/pdb

Classification: TRANSCRIPTION
Organism(s): Thermus thermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-05-14 Released: 2007-05-15
Deposition Author(s): Kumarevel, T.S., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.268 (Depositor), 0.281 (DCC)
R-Value Work:
0.224 (Depositor), 0.237 (DCC)
R-Value Observed:
0.224 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2H0A

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of TTHA0807, a CcpA regulator, from Thermus thermophilus HB8.

Kumarevel, T.S., Tanaka, T., Shinkai, A., Yokoyama, S.

(2009) Proteins

PubMed: 19714777 Search on PubMed
DOI: https://doi.org/10.1002/prot.22552
Primary Citation Related Structures:
2H0A

Organizational Affiliation

RIKEN SPring-8 Center, Harima Institute, Sayo, Hyogo, Japan. tskvel@spring8.or.jp

Macromolecule Content

Total Structure Weight: 30.67 kDa
Atom Count: 2,176
Modeled Residue Count: 258
Deposited Residue Count: 276
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional regulator	A	276	Thermus thermophilus	Mutation(s): 0
UniProt
Find proteins for Q5SK45 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SK45 Go to UniProtKB: Q5SK45
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SK45
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.268 (Depositor), 0.281 (DCC)
R-Value Work: 0.224 (Depositor), 0.237 (DCC)
R-Value Observed: 0.224 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.45	α = 90
b = 74.45	β = 90
c = 138.68	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
CCP4	data scaling
SOLVE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-05-15

Deposition Author(s):

Kumarevel, T.S.

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-05-15
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.