2H01

PY00414- Plasmodium yoelii thioredoxin peroxidase I


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.258 
  • R-Value Observed: 0.258 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 4L0W


Literature

Crystal structure of PY00414 - a Plasmodium yoelii thioredoxin peroxidase I

Artz, J.Qiu, W.Min, J.R.Dong, A.Lew, J.Melone, M.Alam, Z.Weigelt, J.Sundstrom, M.Edwards, A.M.Arrowsmith, C.H.Bochkarev, A.Hui, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
2-CYS PEROXIREDOXIN192Plasmodium yoeliiMutation(s): 0 
EC: 1.11.1 (PDB Primary Data), 1.11.1.24 (UniProt)
UniProt
Find proteins for Q7RSE5 (Plasmodium yoelii yoelii)
Explore Q7RSE5 
Go to UniProtKB:  Q7RSE5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7RSE5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.258 
  • R-Value Observed: 0.258 
  • Space Group: P 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.076α = 90
b = 105.076β = 90
c = 41.833γ = 90
Software Package:
Software NamePurpose
CrystalCleardata collection
HKL-2000data reduction
MOLREPphasing
CNSrefinement
CrystalCleardata reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-05-30
    Type: Initial release
  • Version 1.1: 2007-12-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-03-07
    Changes: Data collection
  • Version 1.4: 2023-08-30
    Changes: Data collection, Database references, Refinement description