2GUW | pdb_00002guw

Crystal structure of AMP Nucleosidase from Salmonella typhimurium LT2

PDB DOI: https://doi.org/10.2210/pdb2GUW/pdb

Classification: HYDROLASE
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-05-01 Released: 2006-06-06
Deposition Author(s): Rao, K.N., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.64 Å
R-Value Free:
0.282 (Depositor), 0.288 (DCC)
R-Value Work:
0.244 (Depositor), 0.241 (DCC)
R-Value Observed:
0.244 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of AMP Nucleosidase from Salmonella typhimurium LT2

Rao, K.N., Swaminathan, S.

To be published.

Macromolecule Content

Total Structure Weight: 162.2 kDa
Atom Count: 9,415
Modeled Residue Count: 1,223
Deposited Residue Count: 1,452
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AMP nucleosidase	A, B, C	484	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	Mutation(s): 0 EC: 3.2.2.4
UniProt
Find proteins for Q8ZNS0 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZNS0 Go to UniProtKB: Q8ZNS0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8ZNS0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.64 Å
R-Value Free: 0.282 (Depositor), 0.288 (DCC)
R-Value Work: 0.244 (Depositor), 0.241 (DCC)
R-Value Observed: 0.244 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.493	α = 90
b = 170.284	β = 90
c = 204.105	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
CBASS	data collection
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-06-06

Deposition Author(s):

Swaminathan, S.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2006-06-06
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance
Version 1.3: 2021-02-03
Changes: Structure summary
Version 1.4: 2024-02-14
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.