2GSC | pdb_00002gsc

Crystal Structure of the Conserved Hypothetical Cytosolic Protein Xcc0516 from Xanthomonas campestris

PDB DOI: https://doi.org/10.2210/pdb2GSC/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Xanthomonas campestris pv. campestris
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-04-26 Released: 2006-10-03
Deposition Author(s): Lin, L.Y., Ching, C.L., Chin, K.H., Chou, S.H., Chan, N.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.283 (Depositor), 0.279 (DCC)
R-Value Work:
0.220 (Depositor), 0.217 (DCC)
R-Value Observed:
0.220 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles.

Lin, L.Y., Ching, C.L., Chin, K.H., Chou, S.H., Chan, N.L.

(2006) Proteins 65: 783-786

PubMed: 16948161 Search on PubMed
DOI: https://doi.org/10.1002/prot.21105
Primary Citation Related Structures:
2GSC

Organizational Affiliation

Institute of Biochemistry, College of Life Sciences, National Chung Hsing University, Taichung City 402, Taiwan.

Macromolecule Content

Total Structure Weight: 73.1 kDa
Atom Count: 4,633
Modeled Residue Count: 567
Deposited Residue Count: 640
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein XCC0516	A, B, C, D, E	128	Xanthomonas campestris pv. campestris	Mutation(s): 0
UniProt
Find proteins for Q8PD29 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8PD29 Go to UniProtKB: Q8PD29
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8PD29
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.283 (Depositor), 0.279 (DCC)
R-Value Work: 0.220 (Depositor), 0.217 (DCC)
R-Value Observed: 0.220 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.794	α = 90
b = 104.257	β = 90
c = 66.489	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-10-03

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-10-03
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.