2GSC

Crystal Structure of the Conserved Hypothetical Cytosolic Protein Xcc0516 from Xanthomonas campestris

• PDB DOI: https://doi.org/10.2210/pdb2GSC/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Xanthomonas campestris pv. campestris
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2006-04-26 Released: 2006-10-03 
• Deposition Author(s): Lin, L.Y., Ching, C.L., Chin, K.H., Chou, S.H., Chan, N.L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free: 0.283 
• R-Value Work: 0.220 
• R-Value Observed: 0.220 

Literature

Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles.

Lin, L.Y., Ching, C.L., Chin, K.H., Chou, S.H., Chan, N.L.

(2006) Proteins 65: 783-786

• PubMed: 16948161 
• DOI: https://doi.org/10.1002/prot.21105
• Primary Citation of Related Structures:  
  2GSC

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Organizational Affiliation: 

Institute of Biochemistry, College of Life Sciences, National Chung Hsing University, Taichung City 402, Taiwan.

Biological Assembly 1  

Global Symmetry: Cyclic - C5  (Explore in 3D)
Global Stoichiometry: Homo 5-mer - A5 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 73.1 kDa 
• Atom Count: 4,633 
• Modelled Residue Count: 567 
• Deposited Residue Count: 640 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein XCC0516	A, B, C, D, E	128	Xanthomonas campestris pv. campestris	Mutation(s): 0
UniProt
Find proteins for Q8PD29 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8PD29  Go to UniProtKB:  Q8PD29

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free: 0.283 
• R-Value Work: 0.220 
• R-Value Observed: 0.220 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.794	α = 90
b = 104.257	β = 90
c = 66.489	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-10-03 
Deposition Author(s): Lin, L.Y., Ching, C.L., Chin, K.H., Chou, S.H., Chan, N.L.

Revision History  

• Version 1.0: 2006-10-03
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-03-13
  Changes: Data collection, Database references