2GL8 | pdb_00002gl8

Human Retinoic acid receptor RXR-gamma ligand-binding domain

• PDB DOI: https://doi.org/10.2210/pdb2GL8/pdb

• Classification: Hormone/Growth factor receptor
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2006-04-04 Released: 2006-04-18 
• Deposition Author(s): Min, J.R., Schuetz, A., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.296 (Depositor), 0.294 (DCC) 
• R-Value Work: 
  0.243 (Depositor), 0.242 (DCC) 
• R-Value Observed: 
  0.245 (Depositor) 

Starting Model: experimental

Literature

The Crystal Structure of Human Retinoic acid receptor RXR-gamma ligand-binding domain.

Schuetz, A., Min, J.R., Loppnau, P., Weigelt, J., Sundstrom, M., Edwards, A.M., Arrowsmith, C.H., Bochkarev, A., Plotnikov, A.N.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 107.98 kDa 
• Atom Count: 5,916 
• Modeled Residue Count: 771 
• Deposited Residue Count: 964 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Retinoic acid receptor RXR-gamma	A, B, C, D	241	Homo sapiens	Mutation(s): 0  Gene Names: RXRG, NR2B3
UniProt & NIH Common Fund Data Resources
Find proteins for P48443 (Homo sapiens) Explore P48443  Go to UniProtKB:  P48443
PHAROS:  P48443 GTEx:  ENSG00000143171

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.296 (Depositor), 0.294 (DCC) 
• R-Value Work:  0.243 (Depositor), 0.242 (DCC) 
• R-Value Observed: 0.245 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.07	α = 90
b = 161.316	β = 109.5
c = 68.682	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
CrystalClear	data reduction
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-04-18 
Deposition Author(s): Min, J.R., Schuetz, A., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2006-04-18
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.3: 2023-08-30
  Changes: Data collection, Database references, Refinement description