2G3A | pdb_00002g3a

Crystal structure of putative acetyltransferase from Agrobacterium tumefaciens

PDB DOI: https://doi.org/10.2210/pdb2G3A/pdb

Classification: TRANSFERASE
Organism(s): Agrobacterium fabrum str. C58
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-02-17 Released: 2006-03-14
Deposition Author(s): Cymborowski, M., Xu, X., Chruszcz, M., Zheng, H., Gu, J., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.227 (Depositor), 0.235 (DCC)
R-Value Work:
0.186 (Depositor), 0.189 (DCC)
R-Value Observed:
0.188 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of putative acetyltransferase from Agrobacterium tumefaciens

Cymborowski, M., Xu, X., Chruszcz, M., Zheng, H., Gu, J., Savchenko, A., Edwards, A., Minor, W.

To be published.

Macromolecule Content

Total Structure Weight: 17.2 kDa
Atom Count: 1,207
Modeled Residue Count: 137
Deposited Residue Count: 152
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
acetyltransferase	A	152	Agrobacterium fabrum str. C58	Mutation(s): 5 EC: 2.3.1
UniProt
Find proteins for Q7CXI0 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore Q7CXI0 Go to UniProtKB: Q7CXI0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7CXI0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.227 (Depositor), 0.235 (DCC)
R-Value Work: 0.186 (Depositor), 0.189 (DCC)
R-Value Observed: 0.188 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.768	α = 90
b = 94.675	β = 90
c = 57.145	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
HKL-3000	phasing
SHELXD	phasing
SHELXE	model building
MLPHARE	phasing
DM	phasing
SOLVE	phasing
RESOLVE	phasing
Coot	model building
CCP4	phasing
O	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-03-14

Deposition Author(s):

Cymborowski, M.

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2006-03-14
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance
Version 1.3: 2011-10-05
Changes: Structure summary
Version 1.4: 2022-04-13
Changes: Database references, Derived calculations, Structure summary
Version 1.5: 2024-10-09
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.