2G04 | pdb_00002g04

Crystal structure of fatty acid-CoA racemase from Mycobacterium tuberculosis H37Rv

PDB DOI: https://doi.org/10.2210/pdb2G04/pdb

Classification: ISOMERASE
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2006-02-11 Released: 2007-01-02
Deposition Author(s): Lee, K.S., Park, S.M., Rhee, K.H., Bang, W.G., Hwang, K.Y., Chi, Y.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.290 (Depositor), 0.286 (DCC)
R-Value Work:
0.240 (Depositor), 0.242 (DCC)
R-Value Observed:
0.240 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 2G04

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of fatty acid-CoA racemase from Mycobacterium tuberculosis H37Rv

Lee, K.S., Park, S.M., Rhee, K.H., Bang, W.G., Hwang, K.Y., Chi, Y.M.

(2006) Proteins 64: 817-822

PubMed: 16755588 Search on PubMed
DOI: https://doi.org/10.1002/prot.21029
Primary Citation Related Structures:
2G04

Organizational Affiliation

Division of Biotechnology and Genetic Engineering, College of Life and Environmental Sciences, Korea University, Seoul, South Korea.

Macromolecule Content

Total Structure Weight: 228.57 kDa
Atom Count: 16,228
Modeled Residue Count: 2,118
Deposited Residue Count: 2,154
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROBABLE FATTY-ACID-CoA RACEMASE FAR	A, B, C, D, E A, B, C, D, E, F	359	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: far EC: 5.1.99.4
UniProt
Find proteins for O53867 (Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)) Explore O53867 Go to UniProtKB: O53867
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O53867
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.290 (Depositor), 0.286 (DCC)
R-Value Work: 0.240 (Depositor), 0.242 (DCC)
R-Value Observed: 0.240 (Depositor)

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 109.562	α = 90
b = 109.562	β = 90
c = 147.973	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
CNS	refinement
HKL-2000	data reduction
CNS	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-01-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-01-02
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2023-10-25
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.