2FPH | pdb_00002fph

Cell division protein ylmH from Streptococcus pneumoniae

PDB DOI: https://doi.org/10.2210/pdb2FPH/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Streptococcus pneumoniae R6
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-01-16 Released: 2007-02-20
Deposition Author(s): Garau, G., Dideberg, O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.299 (Depositor), 0.272 (DCC)
R-Value Work:
0.240 (Depositor), 0.268 (DCC)
R-Value Observed:
0.243 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

Cell division protein ylmH from Streptococcus pneumoniae

Garau, G., Job, V., Dideberg, O.

To be published.

Macromolecule Content

Total Structure Weight: 19.27 kDa
Atom Count: 1,431
Modeled Residue Count: 165
Deposited Residue Count: 165
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ylmH	A [auth X]	165	Streptococcus pneumoniae R6	Mutation(s): 0
UniProt
Find proteins for Q8DNW3 (Streptococcus pneumoniae (strain ATCC BAA-255 / R6)) Explore Q8DNW3 Go to UniProtKB: Q8DNW3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8DNW3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.299 (Depositor), 0.272 (DCC)
R-Value Work: 0.240 (Depositor), 0.268 (DCC)
R-Value Observed: 0.243 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.18	α = 90
b = 46.267	β = 99.7
c = 50.261	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
CCP4	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-02-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-02-20
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2024-02-14
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.