2FNF | pdb_00002fnf

C1 domain of Nore1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 30 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2FNF

This is version 1.4 of the entry. See complete history

Literature

GTP-Ras disrupts the intramolecular complex of C1 and RA domains of Nore1.

Harjes, E.Harjes, S.Wohlgemuth, S.Muller, K.H.Krieger, E.Herrmann, C.Bayer, P.

(2006) Structure 14: 881-888

  • DOI: https://doi.org/10.1016/j.str.2006.03.008
  • Primary Citation Related Structures: 
    2FNF

  • PubMed Abstract: 

    The novel Ras effector mNore1, capable of inducing apoptosis, is a multidomain protein. It comprises a C1 domain homologous to PKC and an RA domain similar to the Ras effectors AF-6 and RalGDS. Here, we determine the affinity of these two domains to the active forms of Ras and Rap1 using isothermal calorimetric titration. The interaction of Ras/Rap1-GTP with the RA domain of mNore1 is weakened significantly by direct binding of the C1 domain to the RA domain. In order to analyze this observation in atomic detail, we solved the C1 solution structure by NMR. By determining chemical shifts and relaxation rates, we can show an intramolecular complex of C1-RA. GTP-Ras titration and binding to RA disrupts this complex and displaces the C1 domain. Once the C1 domain tumbles freely in solution, a lipid binding interface becomes accessible. Furthermore, we provide evidence of phosphatidylinositol 3-phosphate binding of the free C1 domain.


  • Organizational Affiliation
    • Molecular and Structural Biophysics, Max-Planck Institute of Molecular Physiology, Otto-Hahn Strasse 11, D-44227 Dortmund, Germany.

Macromolecule Content 

  • Total Structure Weight: 8.4 kDa 
  • Atom Count: 466 
  • Modeled Residue Count: 59 
  • Deposited Residue Count: 72 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
putative Ras Effector Nore1A [auth X]72Mus musculusMutation(s): 0 
UniProt
Find proteins for Q5EBH1 (Mus musculus)
Explore Q5EBH1 
Go to UniProtKB:  Q5EBH1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5EBH1
Sequence Annotations
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Reference Sequence

Small Molecules

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 30 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-02-07
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-09
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-29
    Changes: Data collection