2FJ2 | pdb_00002fj2

Crystal Structure of Viral Macrophage Inflammatory Protein-II

• PDB DOI: https://doi.org/10.2210/pdb2FJ2/pdb

• Classification: CHEMOKINE
• Organism(s): Human herpesvirus 8 type P (isolate GK18)
• Mutation(s): No 


• Deposited: 2005-12-30 Released: 2006-12-26 
• Deposition Author(s): Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.301 (Depositor) 
• R-Value Work: 
  0.225 (DCC) 
• R-Value Observed: 
  0.248 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of chemically synthesized vMIP-II.

Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C., An, J., Wilson, S.R., Gao, Y.G., Huang, Z.

(2007) Proteins 67: 243-246

• PubMed: 17243149 
• DOI: https://doi.org/10.1002/prot.21172
• Primary Citation Related Structures: 
  2FHT, 2FJ2

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Organizational Affiliation: 
• Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 32.57 kDa 
• Atom Count: 2,183 
• Modeled Residue Count: 270 
• Deposited Residue Count: 284 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Viral macrophage inflammatory protein-II	A, B, C, D	71	N/A	Mutation(s): 0
UniProt
Find proteins for Q98157 (Human herpesvirus 8 type P (isolate GK18)) Explore Q98157  Go to UniProtKB:  Q98157

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.301 (Depositor) 
• R-Value Work:  0.225 (DCC) 
• R-Value Observed: 0.248 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.65	α = 90
b = 65.77	β = 91.62
c = 45.62	γ = 90

Software Package:

Software Name	Purpose
MOLREP	phasing
SHELX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
SCALEPACK	data scaling
SHELXL-97	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-12-26 
Deposition Author(s): Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.

Revision History  

• Version 1.0: 2006-12-26
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-08-30
  Changes: Data collection, Database references, Refinement description
• Version 1.4: 2024-10-16
  Changes: Structure summary