2FHT | pdb_00002fht

Crystal Structure of Viral Macrophage Inflammatory Protein-II

PDB DOI: https://doi.org/10.2210/pdb2FHT/pdb

Classification: CHEMOKINE
Organism(s): Human herpesvirus 8 type P (isolate GK18)
Mutation(s): No

Deposited: 2005-12-27 Released: 2006-12-26
Deposition Author(s): Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.331 (Depositor)
R-Value Work:
0.239 (Depositor)
R-Value Observed:
0.242 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2FHT

This is version 1.6 of the entry. See complete history.

Literature

Crystal structure of chemically synthesized vMIP-II.

Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C., An, J., Wilson, S.R., Gao, Y.G., Huang, Z.

(2007) Proteins 67: 243-246

PubMed: 17243149 Search on PubMed
DOI: https://doi.org/10.1002/prot.21172
Primary Citation Related Structures:
2FHT, 2FJ2

Organizational Affiliation

Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

Macromolecule Content

Total Structure Weight: 8.14 kDa
Atom Count: 558
Modeled Residue Count: 68
Deposited Residue Count: 71
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Viral macrophage inflammatory protein-II	A	71	N/A	Mutation(s): 0
UniProt
Find proteins for Q98157 (Human herpesvirus 8 type P (isolate GK18)) Explore Q98157 Go to UniProtKB: Q98157
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q98157
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.331 (Depositor)
R-Value Work: 0.239 (Depositor)
R-Value Observed: 0.242 (Depositor)

Space Group: P 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.75	α = 90
b = 45.75	β = 90
c = 66.36	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	refinement
SCALEPACK	data scaling
AMoRE	phasing
CNS	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
DENZO	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-12-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-12-26
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-18
Changes: Refinement description
Version 1.4: 2019-07-24
Changes: Data collection, Refinement description
Version 1.5: 2023-08-30
Changes: Data collection, Database references, Refinement description
Version 1.6: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.