2EWW | pdb_00002eww

Crystal Structure of the Pilus Retraction Motor PilT and Bound ATP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 
    0.310 (Depositor), 0.226 (DCC) 
  • R-Value Work: 
    0.239 (Depositor), 0.245 (DCC) 
  • R-Value Observed: 
    0.242 (Depositor) 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history

Literature

Crystal structures of the pilus retraction motor PilT suggest large domain movements and subunit cooperation drive motility.

Satyshur, K.A.Worzalla, G.A.Meyer, L.S.Heiniger, E.K.Aukema, K.G.Misic, A.M.Forest, K.T.

(2007) Structure 15: 363-376

  • DOI: https://doi.org/10.1016/j.str.2007.01.018
  • Primary Citation Related Structures: 
    2EWV, 2EWW, 2EYU, 2GSZ

  • PubMed Abstract: 

    PilT is a hexameric ATPase required for bacterial type IV pilus retraction and surface motility. Crystal structures of ADP- and ATP-bound Aquifex aeolicus PilT at 2.8 and 3.2 A resolution show N-terminal PAS-like and C-terminal RecA-like ATPase domains followed by a set of short C-terminal helices. The hexamer is formed by extensive polar subunit interactions between the ATPase core of one monomer and the N-terminal domain of the next. An additional structure captures a nonsymmetric PilT hexamer in which approach of invariant arginines from two subunits to the bound nucleotide forms an enzymatically competent active site. A panel of pilT mutations highlights the importance of the arginines, the PAS-like domain, the polar subunit interface, and the C-terminal helices for retraction. We present a model for ATP binding leading to dramatic PilT domain motions, engagement of the arginine wire, and subunit communication in this hexameric motor. Our conclusions apply to the entire type II/IV secretion ATPase family.


  • Organizational Affiliation
    • Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA.

Macromolecule Content 

  • Total Structure Weight: 43.07 kDa 
  • Atom Count: 2,750 
  • Modeled Residue Count: 343 
  • Deposited Residue Count: 372 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
twitching motility protein PilT372Aquifex aeolicusMutation(s): 10 
UniProt
Find proteins for O66950 (Aquifex aeolicus (strain VF5))
Explore O66950 
Go to UniProtKB:  O66950
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO66950
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP

Query on ATP



Download:Ideal Coordinates CCD File
B [auth A]ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free:  0.310 (Depositor), 0.226 (DCC) 
  • R-Value Work:  0.239 (Depositor), 0.245 (DCC) 
  • R-Value Observed: 0.242 (Depositor) 
Space Group: P 6
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 107.38α = 90
b = 107.38β = 90
c = 68.86γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
SHARPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-11-21
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-10-30
    Changes: Data collection, Database references, Derived calculations, Structure summary