2EPE | pdb_00002epe

Crystal structure analysis of Hen egg white lysozyme grown by capillary method

• PDB DOI: https://doi.org/10.2210/pdb2EPE/pdb

• Classification: HYDROLASE
• Organism(s): Gallus gallus
• Mutation(s): No 


• Deposited: 2007-03-29 Released: 2007-04-17 
• Deposition Author(s): Naresh, M.D., Subramanian, V., Jaimohan, S.M., Rajaram, A., Arumugam, V., Usha, R., Mandal, A.B.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.211 (Depositor), 0.215 (DCC) 
• R-Value Work: 
  0.165 (Depositor), 0.173 (DCC) 
• R-Value Observed: 
  0.167 (Depositor) 

Starting Model: experimental

Literature

Crystal structure analysis of Hen egg white lysozyme grown by capillary method

Naresh, M.D., Subramanian, V., Jaimohan, S.M., Rajaram, A., Arumugam, V., Usha, R., Mandal, A.B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 14.33 kDa 
• Atom Count: 1,049 
• Modeled Residue Count: 129 
• Deposited Residue Count: 129 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.211 (Depositor), 0.215 (DCC) 
• R-Value Work:  0.165 (Depositor), 0.173 (DCC) 
• R-Value Observed: 0.167 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.243	α = 90
b = 79.243	β = 90
c = 37.829	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MAR345	data collection
AUTOMAR	data reduction
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-04-17 
Deposition Author(s): Naresh, M.D., Subramanian, V., Jaimohan, S.M., Rajaram, A., Arumugam, V., Usha, R., Mandal, A.B.

Revision History  

• Version 1.0: 2007-04-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-11
  Changes: Refinement description
• Version 1.4: 2023-10-25
  Changes: Data collection, Database references, Refinement description
• Version 1.5: 2024-11-20
  Changes: Structure summary