2EDO | pdb_00002edo

Solution structure of the first ig-like domain from human CD48 antigen

PDB DOI: https://doi.org/10.2210/pdb2EDO/pdb

Classification: CELL ADHESION
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-02-14 Released: 2007-08-14
Deposition Author(s): Nagashima, K., Nagashima, T., Yoshida, M., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the first ig-like domain from human CD48 antigen

Nagashima, K., Nagashima, T., Yoshida, M., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 13.9 kDa
Atom Count: 979
Modeled Residue Count: 121
Deposited Residue Count: 121
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CD48 antigen	A	121	Homo sapiens	Mutation(s): 0 Gene Names: CD48, BCM1, BLAST1
UniProt & NIH Common Fund Data Resources
Find proteins for P09326 (Homo sapiens) Explore P09326 Go to UniProtKB: P09326
PHAROS: P09326 GTEx: ENSG00000117091
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P09326
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-08-14

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-08-14
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.