2ED8 | pdb_00002ed8

Solution structure of the second fibronectin type III domain of human Netrin receptor DCC

PDB DOI: https://doi.org/10.2210/pdb2ED8/pdb
BMRB: 11103

Classification: APOPTOSIS
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-02-14 Released: 2008-02-26
Deposition Author(s): Tochio, N., Koshiba, S., Tomizawa, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2ED8

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the second fibronectin type III domain of human Netrin receptor DCC

Tochio, N., Koshiba, S., Tomizawa, T., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 11.2 kDa
Atom Count: 789
Modeled Residue Count: 106
Deposited Residue Count: 106
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Netrin receptor DCC	A	106	Homo sapiens	Mutation(s): 0 Gene Names: DCC
UniProt & NIH Common Fund Data Resources
Find proteins for P43146 (Homo sapiens) Explore P43146 Go to UniProtKB: P43146
PHAROS: P43146 GTEx: ENSG00000187323
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P43146
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-02-26

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2008-02-26
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.