2E5E | pdb_00002e5e

Solution Structure of Variable-type Domain of Human Receptor for Advanced Glycation Endproducts

PDB DOI: https://doi.org/10.2210/pdb2E5E/pdb
BMRB: 7364

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-12-20 Released: 2007-12-25
Deposition Author(s): Matsumoto, S., Yoshida, T., Yasumatsu, I., Yamamoto, H., Kobayashi, Y., Ohkubo, T.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 15
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Solution Structure of Variable-type Domain of Human Receptor for Advanced Glycation Endproducts

Matsumoto, S., Yoshida, T., Yasumatsu, I., Yamamoto, H., Kobayashi, Y., Ohkubo, T.

To be published.

Macromolecule Content

Total Structure Weight: 11.22 kDa
Atom Count: 788
Modeled Residue Count: 101
Deposited Residue Count: 101
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Advanced glycosylation end product-specific receptor	A	101	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q15109 (Homo sapiens) Explore Q15109 Go to UniProtKB: Q15109
PHAROS: Q15109 GTEx: ENSG00000204305
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q15109
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 15
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-12-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-12-25
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-09
Changes: Database references, Derived calculations
Version 1.3: 2024-10-30
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.