2DIZ | pdb_00002diz

The solution structure of the third thioredoxin domain of human Thioredoxin domain-containing protein 5

PDB DOI: https://doi.org/10.2210/pdb2DIZ/pdb
BMRB: 11107

Classification: ELECTRON TRANSPORT
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2006-03-30 Released: 2006-09-30
Deposition Author(s): Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the least restraint violations

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

The solution structure of the third thioredoxin domain of human Thioredoxin domain-containing protein 5

Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 12.79 kDa
Atom Count: 898
Modeled Residue Count: 117
Deposited Residue Count: 117
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioredoxin domain-containing protein 5	A	117	Homo sapiens	Mutation(s): 0 Gene Names: TXNDC5 EC: 5.3.4.1 (UniProt), 1.8.4 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NBS9 (Homo sapiens) Explore Q8NBS9 Go to UniProtKB: Q8NBS9
PHAROS: Q8NBS9 GTEx: ENSG00000239264
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8NBS9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-09-30

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-09-30
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-10-30
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.