2D9C

Solution structure of the first ig-like domain of signal-regulatory protein beta-1 (SIRP-beta-1)

• PDB DOI: https://doi.org/10.2210/pdb2D9C/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2005-12-09 Released: 2006-12-09 
• Deposition Author(s): Nagashima, K., Hayashi, F., Yoshida, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the least restraint violations 

Literature

Solution structure of the first ig-like domain of signal-regulatory protein beta-1 ( SIRP-beta-1)

Nagashima, K., Hayashi, F., Yoshida, M., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 14.17 kDa 
• Atom Count: 993 
• Modelled Residue Count: 136 
• Deposited Residue Count: 136 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Signal-regulatory protein beta-1	A	136	Homo sapiens	Mutation(s): 0  Gene Names: SIRPB1
UniProt & NIH Common Fund Data Resources
Find proteins for O00241 (Homo sapiens) Explore O00241  Go to UniProtKB:  O00241
PHAROS:  O00241 GTEx:  ENSG00000101307

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-12-09 
Deposition Author(s): Nagashima, K., Hayashi, F., Yoshida, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2006-12-09
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-10-30
  Changes: Data collection, Structure summary