2D8K | pdb_00002d8k

Solution structure of the first C2 domain of synaptotagmin VII

PDB DOI: https://doi.org/10.2210/pdb2D8K/pdb

Classification: ENDOCYTOSIS/EXOCYTOSIS
Organism(s): Homo sapiens
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2005-12-06 Released: 2006-06-06
Deposition Author(s): Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function,structures with the lowest energy

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Solution structure of the first C2 domain of synaptotagmin VII

Nagashima, T., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 16.14 kDa
Atom Count: 1,139
Modeled Residue Count: 141
Deposited Residue Count: 141
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
synaptotagmin VII	A	141	Homo sapiens	Mutation(s): 0 Gene Names: SYT7 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for O43581 (Homo sapiens) Explore O43581 Go to UniProtKB: O43581
PHAROS: O43581 GTEx: ENSG00000011347
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O43581
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function,structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-06-06

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-06-06
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.